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Genomics Data Lake

SnpEff

Genomics SnpEff

SnpEff: Genomic variant annotations and functional effect prediction toolbox

Overview

SnpEff Genetic variant annotation and functional effect prediction toolbox. It annotates and predicts the effects of genetic variants on genes and proteins (such as amino acid changes).

For more details on the data refer to the User Manual.

Data Source

This dataset is a mirror of http://downloads.sourceforge.net/project/snpeff/databases/

Data Volumes and Update Frequency

This dataset contains approximately 2 TB of data and is updated monthly.

Storage Location

This dataset is stored in the West US 2 and West Central US Azure regions. Allocating compute resources in West US 2 or West Central US is recommended for affinity.

Data Access

West US 2: https://datasetsnpeff.blob.core.windows.net/dataset

West Central US: https://datasetsnpeff-secondary.blob.core.windows.net/dataset

SAS Token: sv=2019-10-10&st=2020-09-01T00%3A00%3A00Z&se=2050-09-01T00%3A00%3A00Z&si=prod&sr=c&sig=isafOa9tGnYBAvsXFUMDGMTbsG2z%2FShaihzp7JE5dHw%3D

Use Terms

Data is available without restrictions. More information and citation details are available here.

Contact

Pablo Cingolani

Notices

MICROSOFT PROVIDES AZURE OPEN DATASETS ON AN “AS IS” BASIS. MICROSOFT MAKES NO WARRANTIES, EXPRESS OR IMPLIED, GUARANTEES OR CONDITIONS WITH RESPECT TO YOUR USE OF THE DATASETS. TO THE EXTENT PERMITTED UNDER YOUR LOCAL LAW, MICROSOFT DISCLAIMS ALL LIABILITY FOR ANY DAMAGES OR LOSSES, INCLUDING DIRECT, CONSEQUENTIAL, SPECIAL, INDIRECT, INCIDENTAL OR PUNITIVE, RESULTING FROM YOUR USE OF THE DATASETS.

Access

Available inWhen to use
Azure Notebooks

Quickly explore the dataset with Jupyter notebooks hosted on Azure or your local machine.

Select your preferred service:

Azure Notebooks

Azure Notebooks

Package: Language: Python