Pomiń nawigację

Deploy a Nextflow genomics cluster

Ostatnia aktualizacja: 14.06.2018

This template deploys a scalable Nextflow cluster with a Jumpbox, n cluster nodes, docker support and shared storage.

Ten szablon usługi Azure Resource Manager (ARM) został utworzony przez członka społeczności, a nie przez firmę Microsoft. Każdy szablon ARM jest licencjonowany przez swojego właściciela, a nie firmę Microsoft. Firma Microsoft nie odpowiada za szablony ARM dostarczane i licencjonowane przez członków społeczności i nie sprawdza ich pod kątem bezpieczeństwa, zgodności ani wydajności. Szablony ARM społeczności nie są wspierane w ramach żadnego programu lub usługi pomocy technicznej firmy Microsoft i są udostępniane W STANIE, W JAKIM SIĘ ZNAJDUJĄ bez żadnego rodzaju gwarancji.

Parametry

Nazwa parametru Opis
dnsNameForJumpBox Unique DNS Name for the Public IP used to access the Docker Virtual Machine (master node).
vmImageReference The image to use for VMs created. This can be marketplace or custom image
vmNodeSku Size of VMs in the VM Scale Set.
vmMasterSku Size of VMs in the VM Scale Set.
vmMasterDiskType Choose between a standard disk for and SSD disk for the master nodes NFS fileshare
vmMasterDiskSize The SSD Size to be used for the NFS file share. For pricing details see https://azure.microsoft.com/en-us/pricing/details/managed-disks/
vmAdditionalInstallScriptUrl An additional installs script (bash run as root) to be run after nodes/master are configured. Can be used to mount additional storage or do additional setup
vmAdditionalInstallScriptArgument An argument to be passed to the additional install script
nextflowInstallUrl The install url for nextflow, this can be used to pin nextflow versions
instanceCount Number of cluster VM instances (100 or less).
adminUsername Admin username on all VMs.
adminPassword Admin password on all VMs.
vnetName Name of the virtual network to deploy the scale set into.
subnetName Name of the subnet to deploy the scale set into.
shareName Azure file share name.
mountpointPath Path on VM to mount file shares. '/datadisks/disk1/' is a Premium Managed disk with high iops, this will suit most uses.
nodeMaxCpus Sets the cluster.maxCpus setting on all cluster nodes
_artifactsLocation *Advanced* This is best left as default unless you are an advanced user. The base URI where artifacts required by this template are located.
_artifactsLocationSasToken *Advanced* This should be left as default unless you are an advanced user. The sasToken required to access _artifactsLocation. When the template is deployed using the accompanying scripts, a sasToken will be automatically generated.
_artifactsSharedFolder *Advanced* This should be left as default unless you are an advanced user. The folder in the artifacts location were shared scripts are stored.
_artifactsNextflowFolder *Advanced* This should be left as default unless you are an advanced user. The folder in teh artifacts location were nextflow scripts are stored.

Korzystanie z szablonu

PowerShell

New-AzureRmResourceGroupDeployment -Name <deployment-name> -ResourceGroupName <resource-group-name> -TemplateUri https://raw.githubusercontent.com/azure/azure-quickstart-templates/master/nextflow-genomics-cluster-ubuntu/azuredeploy.json
Instalowanie i konfigurowanie programu PowerShell systemu Azure

Wiersz polecenia

azure config mode arm
azure group deployment create <my-resource-group> <my-deployment-name> --template-uri https://raw.githubusercontent.com/azure/azure-quickstart-templates/master/nextflow-genomics-cluster-ubuntu/azuredeploy.json
Instalowanie i konfigurowanie międzyplatformowego interfejsu wiersza polecenia platformy Azure