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This template deploys a scalable Nextflow cluster with a Jumpbox, n cluster nodes, docker support and shared storage.
Deze ARM-sjabloon (Azure Resource Manager) is gemaakt door een lid van de community, niet door Microsoft. Elke ARM-sjabloon wordt aan u in licentie gegeven onder een licentieovereenkomst van de eigenaar, niet van Microsoft. Microsoft is niet verantwoordelijk voor ARM-sjablonen die door communityleden worden verstrekt en in licentie worden gegeven, en test deze sjablonen ook niet op veiligheid, compatibiliteit of prestaties. ARM-sjablonen van de community worden onder geen enkel programma of geen enkele service van Microsoft ondersteund, en worden 'AS IS' beschikbaar gesteld, zonder enige vorm van garantie.
Parameters
| Parameternaam | Beschrijving |
|---|---|
| location | Location for all resources |
| dnsNameForJumpBox | Unique DNS Name for the Public IP used to access the Docker Virtual Machine (master node). |
| vmImageReference | The image to use for VMs created. This can be marketplace or custom image |
| vmNodeSku | Size of VMs in the VM Scale Set. |
| vmMasterSku | Size of the master node. |
| vmMasterDiskType | Choose between a standard disk for and SSD disk for the master node's NFS fileshare |
| vmMasterDiskSize | The SSD Size to be used for the NFS file share. For pricing details see https://azure.microsoft.com/en-us/pricing/details/managed-disks/ |
| vmAdditionalInstallScriptUrl | An additional installs script (bash run as root) to be run after nodes/master are configured. Can be used to mount additional storage or do additional setup |
| vmAdditionalInstallScriptArgument | An argument to be passed to the additional install script |
| nextflowInstallUrl | The install URL for nextflow, this can be used to pin nextflow versions |
| instanceCount | Number of cluster VM instances (100 or less). |
| adminUsername | Admin username on all VMs. |
| authenticationType | Type of authentication to use on the Virtual Machine. SSH key is recommended. |
| adminPasswordOrKey | SSH Key or password for the Virtual Machine. SSH key is recommended. |
| vnetName | Name of the virtual network to deploy the scale set into. |
| subnetName | Name of the subnet to deploy the scale set into. |
| shareName | Azure file share name. |
| mountpointPath | Path on VM to mount file shares. '/datadisks/disk1/' is a Premium Managed disk with high iops, this will suit most uses. |
| nodeMaxCpus | Sets the cluster.maxCpus setting on all cluster nodes |
| forceUpdateTag | Determines whether to run the custom script extension on a subsequent deployment. Use the defaultValue. |
| _artifactsLocation | *Advanced* This is best left as default unless you are an advanced user. The base URI where artifacts required by this template are located. |
| _artifactsLocationSasToken | *Advanced* This should be left as default unless you are an advanced user. The sasToken required to access _artifactsLocation. When the template is deployed using the accompanying scripts, a sasToken will be automatically generated. |
| _diskInitScriptUri | *Advanced* This should be left as default unless you are an advanced user. The folder in the artifacts location were shared scripts are stored. |
| _artifactsNextflowFolder | *Advanced* This should be left as default unless you are an advanced user. The folder in the artifacts location were nextflow scripts are stored. |
De sjabloon gebruiken
PowerShell
New-AzResourceGroup -Name <resource-group-name> -Location <resource-group-location> #use this command when you need to create a new resource group for your deploymentAzure PowerShell installeren en configureren
New-AzResourceGroupDeployment -ResourceGroupName <resource-group-name> -TemplateUri https://raw.githubusercontent.com/Azure/azure-quickstart-templates/master/application-workloads/nextflow/nextflow-genomics-cluster-ubuntu/azuredeploy.json
Opdrachtregel
az group create --name <resource-group-name> --location <resource-group-location> #use this command when you need to create a new resource group for your deploymentDe platformoverschrijdende Azure-opdrachregelinterface installeren en configureren
az group deployment create --resource-group <my-resource-group> --template-uri https://raw.githubusercontent.com/Azure/azure-quickstart-templates/master/application-workloads/nextflow/nextflow-genomics-cluster-ubuntu/azuredeploy.json