Deploy a Nextflow genomics cluster

게시자: Lawrence Gripper
마지막 업데이트: 2018-01-22

This template deploys a scalable Nextflow cluster with a Jumpbox, n cluster nodes, docker support and shared storage.

이 ARM(Azure Resource Manager) 템플릿은 Microsoft가 아니라 커뮤니티 구성원에 의해 만들어졌습니다. 각 ARM 템플릿은 Microsoft가 아닌 해당 소유자에 의해 사용이 허가됩니다. Microsoft는 커뮤니티 구성원에 의해 제공 및 라이선스가 부여된 ARM에 대해 책임이 없으며, 보안, 호환성 또는 성능을 검사하지 않습니다. 커뮤니티 ARM 템플릿은 Microsoft 지원 프로그램 또는 서비스에서 지원되지 않고, 어떠한 보증도 없이 있는 그래도 제공됩니다.

매개 변수

매개 변수 이름 설명
dnsNameForJumpBox Unique DNS Name for the Public IP used to access the Docker Virtual Machine (master node).
vmImageReference The image to use for VMs created. This can be marketplace or custom image
vmNodeSku Size of VMs in the VM Scale Set.
vmMasterSku Size of VMs in the VM Scale Set.
vmMasterDiskType Choose between a standard disk for and SSD disk for the master nodes NFS fileshare
vmMasterDiskSize The SSD Size to be used for the NFS file share. For pricing details see https://azure.microsoft.com/en-us/pricing/details/managed-disks/
vmAdditionalInstallScriptUrl An additional installs script (bash run as root) to be run after nodes/master are configured. Can be used to mount additional storage or do additional setup
vmAdditionalInstallScriptArgument An argument to be passed to the additional install script
nextflowInstallUrl The install url for nextflow, this can be used to pin nextflow versions
instanceCount Number of cluster VM instances (100 or less).
adminUsername Admin username on all VMs.
adminPassword Admin password on all VMs.
vnetName Name of the virtual network to deploy the scale set into.
subnetName Name of the subnet to deploy the scale set into.
shareName Azure file share name.
mountpointPath Path on VM to mount file shares. '/datadisks/disk1/' is a Premium Managed disk with high iops, this will suit most uses.
nodeMaxCpus Sets the cluster.maxCpus setting on all cluster nodes
_artifactsLocation *Advanced* This is best left as default unless you are an advanced user. The base URI where artifacts required by this template are located.
_artifactsLocationSasToken *Advanced* This should be left as default unless you are an advanced user. The sasToken required to access _artifactsLocation. When the template is deployed using the accompanying scripts, a sasToken will be automatically generated.
_artifactsSharedFolder *Advanced* This should be left as default unless you are an advanced user. The folder in the artifacts location were shared scripts are stored.
_artifactsNextflowFolder *Advanced* This should be left as default unless you are an advanced user. The folder in teh artifacts location were nextflow scripts are stored.

템플릿 사용

PowerShell

New-AzureRmResourceGroupDeployment -Name <deployment-name> -ResourceGroupName <resource-group-name> -TemplateUri https://raw.githubusercontent.com/azure/azure-quickstart-templates/master/nextflow-genomics-cluster-ubuntu/azuredeploy.json
Azure PowerShell 설치 및 구성

명령줄

azure config mode arm
azure group deployment create <my-resource-group> <my-deployment-name> --template-uri https://raw.githubusercontent.com/azure/azure-quickstart-templates/master/nextflow-genomics-cluster-ubuntu/azuredeploy.json
Azure 크로스 플랫폼 명령줄 인터페이스 설치 및 구성